摘要:基于结构的药物设计方法到底有没有用?Abrun K. Ghosh与Sandra Gemma主编的《Structure-based Design of Drugs and other Bioactive Molecules: Tools and Strategies》一书总结了截止2012年基于结构药物设计策略研发的新药,本文将这34个药物做成一个列表供大家参考。药明康德新药研发有限公司将该书翻译成中文:《基于结构的药物及其他生物活性分子设计:工具和策略》科学出版社,京东有售。

来源:Arun K. Ghosh and Sandra Gemma《Structure-based Design of Drugs and other Bioactive Molecules Toos and Strategies》药明康德新药开发有限公司译 科学出版社
编译:肖高铿

一. 前言

基于结构的药物设计方法到底有没有用?Abrun K. Ghosh与Sandra Gemma主编的《Structure-based Design of Drugs and other Bioactive Molecules: Tools and Strategies》一书总结了截止2012年基于结构药物设计策略研发的新药,可以回答这个问题。本文将该书提到的34个药物制成一个列表供大家参考。药明康德新药研发有限公司将该书翻译成中文:《基于结构的药物及其他生物活性分子设计:工具和策略》科学出版社,京东有售。

二. 说明

  • 推荐在PC上用Firefox, Google Chrome, UC浏览器,以及Mac的Safari
  • 化合物结构的图片加载可能需要1-10秒时间,可能一开始看不到结构,请耐心等待
  • 鼠标操作:将鼠标悬停在图片上,滚动中间滚轮,可以放大、缩小图片;按住左键,移动鼠标可以移动分子;右键具有多种结构格式的输出与搜索功能。
  • 鼠标右键:将结构以SMILES、MOL等格式复制出来
  • 鼠标右键:复制INCHIKEY,搜索google、PubMed、Chemspider
  • 鼠标右键:复制的MOL结构可以直接在Molbase网站搜索供应商

三. 34个基于结构的药物设计策略开发的新药

结构 名称 上市时间 作用机理与适应症 文献
卡托普利 1981 ACE抑制剂/抗高血压 1
多佐胺 1995 碳酸酐酶抑制剂/抗青光眼 2
沙奎那韦 1995 HIV蛋白酶抑制剂/抗艾滋病 3
利托那韦 1996 HIV蛋白酶抑制剂/抗艾滋病 4
茚地那韦 1996 HIV蛋白酶抑制剂/抗艾滋病 5
布林佐胺 1999 碳酸酐酶抑制剂/抗青光眼 6
奈非那韦 1999 HIV蛋白酶抑制剂/抗艾滋病 7
安普那韦 1999 HIV蛋白酶抑制剂/抗艾滋病 8
洛匹那韦 1999 HIV蛋白酶抑制剂/抗艾滋病 9
扎那米韦 1999 神经酰胺酶抑制剂/抗流感 10
奥司他韦 1999 神经酰胺酶抑制剂/抗流感 11
伊马替尼 2001 BCR-ABL Kinase/慢性髓细胞白血病 12
吉非替尼 2003 EGFR Kinase/抗癌 13
阿扎那韦 2003 HIV蛋白酶抑制剂/抗艾滋病 14
呋山那韦 2003 HIV蛋白酶抑制剂/抗艾滋病 15
厄洛替尼 2004 EGFR kinase抑制剂/抗癌 16
希美加群 2004 凝血酶抑制剂/抗凝剂 17
索拉菲尼 2005 VEGFR Kinase抑制剂/抗癌 18
替拉那韦 2005 HIV蛋白酶抑制剂/抗艾滋病 19
乌地那非 2005 PDE-5抑制剂/勃起功能障碍 20
舒尼替尼 2006 多种受体酪氨酸激酶抑制剂/抗癌 21
达芦那韦 2006 HIV蛋白酶抑制剂/抗艾滋病 22
伏林司他 2006 组蛋白去乙酰基酶抑制剂/抗癌 23
达沙替尼 2006 酪氨酸激酶抑制剂/抗白血病 24
尼洛替尼 2006 BCR-ABL激酶抑制剂/抗白血病 25
阿利吉轮 2007 肾素抑制剂/抗高血压 26
拉帕替尼 2007 EGFR,EGFR2激酶抑制剂/抗癌 27
利伐沙班 2008 Xa因子抑制剂/抗凝血 28
达比加群酯 2008 凝血酶抑制剂/抗凝血 29
依曲伟林 2008 NNRT(非核苷类逆转录酶)抑制剂/抗艾滋病 30
帕唑帕尼 2009 多种激酶抑制剂/抗癌 31
维罗替尼 2011 B-Raf激酶抑制剂/抗癌 32
克唑替尼 2011 c-MET、ALK激酶抑制剂/抗癌 33
普纳替尼 2012 BCR-ABL激酶抑制剂/抗白血病 34

四. 文献

  1. Cushman DW, Cheung HS, Sabo EF, Ondetti A. Design of Potent Competitive Inhibitors of Angiotensin-Converting Enzyme. Carboxyalkanoyl and Mercaptoalkanoyl Amino Acids. Biochemistry. 1977;16(25):5484-5491. doi:10.1021/bi00644a014.
  2. Baldwin JJ, Ponticello GS, Anderson PS, et al. Thienothiopyran-2-sulfonamides: Novel Topically Active Carbonic Anhydrase Inhibitors for the Treatment of Glaucoma. J Med Chem. 1989;32(12):2510-2513. doi:10.1021/jm00132a003.
  3. Roberts NA, Martin JA, Kinchington D, et al. Rational design of peptide-based HIV proteinase inhibitors. Science (80- ). 1990;248(4953):358-361. doi:10.1126/science.2183354.
  4. Kempf DJ, Sham HL, Marsh KC, et al. Discovery of ritonavir, a potent inhibitor of HIV protease with high oral bioavailability and clinical efficacy. J Med Chem. 1998;41(4):602-617. doi:10.1021/jm970636+.
  5. Dorsey BD, Levin RB, McDaniel SL, et al. L-735,524: The Design of a Potent and Orally Bioavailable HIV Protease Inhibitor. J Med Chem. 1994;37(21):3443-3451. doi:10.1021/jm00047a001.
  6. Silver LH. Dose-response evaluation of the ocular hypotensive effect of brinzolamide ophthalmic suspension (Azopt(®)). Surv Ophthalmol. 2000;44(SUPPL. 2):147-153. doi:10.1016/S0039-6257(99)00110-1.
  7. Kaldor SW, Kalish VJ, Davies JF, et al. Viracept (nelfinavir mesylate, AG1343): A potent, orally bioavailable inhibitor of HIV-1 protease. J Med Chem. 1997;40(24):3979-3985. doi:10.1021/jm9704098.
  8. Kim EE, Bakei CT, Dwyer MD, et al. Crystal Structure of HIV-1 Protease in Complex with VX-478, a Potent and Orally Bioavailable Inhibitor of the Enzyme. J Am Chem Soc. 1995;117(3):1181-1182. doi:10.1021/ja00108a056.
  9. Sham HL, Kempf DJ, Molla A, et al. ABT-378, a highly potent inhibitor of the human immunodeficiency virus protease. Antimicrob Agents Chemother. 1998;42(12):3218-3224. http://www.ncbi.nlm.nih.gov/pubmed/9835517%5Cnhttp://www.ncbi.nlm.nih.gov/pmc/articles/PMC106025/pdf/ac003218.pdf.
  10. von Itzstein M, Wu WY, Kok GB, et al. Rational design of potent sialidase-based inhibitors of influenza virus replication. Nature. 1993;363(6428):418-423. doi:10.1038/363418a0.
  11. Kim CU, Lew W, Williams MA, et al. Structure-activity relationship studies of novel carbocyclic influenza neuraminidase inhibitors. J Med Chem. 1998;41(14):2451-2460. doi:10.1021/jm980162u.
  12. Druker BJ, Lydon NB. Lessons learned from the development of an abl tyrosine kinase inhibitor for chronic myelogenous leukemia. J Clin Invest. 2000;105(1):3-7. doi:10.1172/JCI9083.
  13. Zimmermann J, Buchdunger E, Mett H, Meyer T, Lydon NB, Traxler P. Phenylamino-pyrimidine (PAP) – Derivatives: A new class of potent and highly selective PDGF-Receptor autophosphorylation inhibitors. Bioorganic Med Chem Lett. 1996;6(11):1221-1226. doi:10.1016/0960-894X(96)00197-7.
  14. Robinson BS, Riccardi K a, Gong YF, et al. BMS-232632, a highly potent human immunodeficiency virus protease inhibitor that can be used in combination with other available antiretroviral agents. Antimicrob Agents Chemother. 2000;44(8):2093-2099. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=90019&tool=pmcentrez&rendertype=abstract.
  15. Becker S, Thornton L. Fosamprenavir: advancing HIV protease inhibitor treatment options. Expert Opin Pharmacother. 2004;5(9):1995-2005. doi:10.1517/14656566.5.9.1995.
  16. Pollack VA, Savage DM, Baker DA, et al. Inhibition of epidermal growth factor receptor-associated tyrosine phosphorylation in human carcinomas with CP-358,774: dynamics of receptor inhibition in situ and antitumor effects in athymic mice. J Pharmacol Exp Ther. 1999;291(0022-3565 (Print)):739-748.
  17. Gustafsson D, Nyström JE, Carlsson S, et al. The direct thrombin inhibitor melagatran and its oral prodrug H 376/95: Intestinal absorption properties, biochemical and pharmacodynamic effects. Thromb Res. 2001;101(3):171-181. doi:10.1016/S0049-3848(00)00399-6.
  18. Wilhelm SM, Carter C, Tang LY, et al. BAY 43-9006 exhibits broad spectrum oral antitumor activity and targets the RAF/MEK/ERK pathway and receptor tyrosine kinases involved in tumor progression and angiogenesis. Cancer Res. 2004;64(19):7099-7109. doi:10.1158/0008-5472.CAN-04-1443.
  19. Turner SR, Strohbach JW, Tommasi RA, et al. Tipranavir (PNU-140690): A potent, orally bioavailable nonpeptidic HIV protease inhibitor of the 5,6-dihydro-4-hydroxy-2-pyrone sulfonamide class. J Med Chem. 1998;41(18):3467-3476. doi:10.1021/jm9802158.
  20. Kang KK, Yu JY, Yoo M, Kwon JW. The effect of DA-8159, a novel PDE5 inhibitor, on erectile function in the rat model of hypercholesterolemic erectile dysfunction. Int J Impot Res. 2005;17(5):409-416. doi:10.1038/sj.ijir.3901331.
  21. Mendel DB, Laird AD, Xin X, et al. In Vivo Antitumor Activity of SU11248, a Novel Tyrosine Kinase Inhibitor Targeting Vascular Endothelial Growth Factor and Platelet-derived Growth Factor Receptors. Clin Cancer Res. 2003;9(1):327 LP-337. http://clincancerres.aacrjournals.org/content/9/1/327.abstract.
  22. Ghosh AK, Dawson ZL, Mitsuya H. Darunavir, a conceptually new HIV-1 protease inhibitor for the treatment of drug-resistant HIV. Bioorganic Med Chem. 2007;15(24):7576-7580. doi:10.1016/j.bmc.2007.09.010.
  23. Kelly WK, O’Connor OA, Krug LM, et al. Phase I study of an oral histone deacetylase inhibitor, suberoylanilide hydroxamic acid, in patients with advanced cancer. J Clin Oncol. 2005;23(17):3923-3931. doi:10.1200/JCO.2005.14.167.
  24. Lombardo LJ, Lee FY, Chen P, et al. Discovery of N -(2-Chloro-6-methyl- phenyl)-2-(6-(4-(2-hydroxyethyl)- piperazin-1-yl)-2-methylpyrimidin-4- ylamino)thiazole-5-carboxamide (BMS-354825), a Dual Src/Abl Kinase Inhibitor with Potent Antitumor Activity in Preclinical Assays. J Med Chem. 2004;47(27):6658-6661. doi:10.1021/jm049486a.
  25. Weisberg E, Manley PW, Breitenstein W, et al. Characterization of AMN107, a selective inhibitor of native and mutant Bcr-Abl. Cancer Cell. 2005;7(2):129-141. doi:10.1016/j.ccr.2005.01.007.
  26. Rahuel J, Rasetti V, Maibaum J, et al. Structure-based drug design: the discovery of novel nonpeptide orally active inhibitors of human renin. Chem Biol. 2000;7(7):493-504. doi:10.1016/S1074-5521(00)00134-4.
  27. Roehrig S, Straub A, Pohlmann J, et al. Discovery of the Novel Antithrombotic Agent 5-Chloro-N-({(5S)-2-oxo-3- [4-(3-oxomorpholin-4-yl)phenyl]-1,3-oxazolidin-5-yl}methyl)thiophene- 2-carboxamide (BAY 59-7939): An Oral, Direct Factor Xa Inhibitor. J Med Chem. 2005;48(19):5900-5908. doi:10.1021/jm050101d.
  28. Roehrig S, Straub A, Pohlmann J, et al. Discovery of the Novel Antithrombotic Agent 5-Chloro-N-({(5S)-2-oxo-3- [4-(3-oxomorpholin-4-yl)phenyl]-1,3-oxazolidin-5-yl}methyl)thiophene- 2-carboxamide (BAY 59-7939): An Oral, Direct Factor Xa Inhibitor. J Med Chem. 2005;48(19):5900-5908. doi:10.1021/jm050101d.
  29. Sorbera LA, Bozzo J, Castañer J. Dabigatran/Dabigatran Etexilate: Prevention of DVT prevention of ischemic stroke thrombin inhibitor. Drugs Future. 2005;30(9):877-885. doi:10.1358/dof.2005.030.09.938760.
  30. Das K, Clark AD, Lewi PJ, et al. Roles of Conformational and Positional Adaptability in Structure-Based Design of TMC125-R165335 (Etravirine) and Related Non-nucleoside Reverse Transcriptase Inhibitors That Are Highly Potent and Effective against Wild-Type and Drug-Resistant HIV-1 Varian. J Med Chem. 2004;47(10):2550-2560. doi:10.1021/jm030558s.
  31. Sleijfer S, Ray-Coquard I, Papai Z, et al. Pazopanib, a multikinase angiogenesis inhibitor, in patients with relapsed or refractory advanced soft tissue sarcoma: A phase II study from the European organisation for research and treatment of cancer-soft tissue and bone sarcoma group (EORTC Study 620. J Clin Oncol. 2009;27(19):3126-3132. doi:10.1200/JCO.2008.21.3223.
  32. Tsai J, Lee JT, Wang W, et al. Discovery of a selective inhibitor of oncogenic B-Raf kinase with potent antimelanoma activity. Proc Natl Acad Sci. 2008;105(8):3041-3046. doi:10.1073/pnas.0711741105.
  33. Cui JJ, Tran-Dubé M, Shen H, et al. Structure based drug design of crizotinib (PF-02341066), a potent and selective dual inhibitor of mesenchymal-epithelial transition factor (c-MET) kinase and anaplastic lymphoma kinase (ALK). J Med Chem. 2011;54(18):6342-6363. doi:10.1021/jm2007613.
  34. Huang WS, Metcalf CA, Sundaramoorthi R, et al. Discovery of 3-[2-(imidazo[1,2- b ]pyridazin-3-yl)ethynyl]-4-methyl- N -{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzamide (AP24534), a potent, orally active pan-inhibitor of breakpoint cluster region-abelson (BCR-ABL) kinase includin. J Med Chem. 2010;53(12):4701-4719. doi:10.1021/jm100395q.